Welcome to Picasso’s documentation!

This documentation is based on the Nature Protocols publication. Its aim is to cover all the recent updates.

Contents:

• design
  • Design rectangular DNA origami
• simulate
  • Simulate DNA-PAINT image acquistions
• server
  • Functionality
  • Database
  • Localize
  • Server
• localize
  • Identification and fitting of single-molecule spots
  • Camera Config
  • 3D-Calibration
• filter
  • Filtering of localizations
• render
  • Opening Files
  • Drift Correction
  • Picking of regions of interest
  • 3D rotation window
  • RESI
  • Dialogs
  • Menu items
• average
  • Particle Averaging
• filetypes
  • Movie Files
  • HDF5 Files
  • Importing HDF5 files in Pandas, MATLAB and Origin
  • Localization HDF5 Files
  • HDF5 Pick Property Files
  • YAML Metadata Files
• CMD
  • localize
  • csv2hdf
  • join
  • link
  • cluster_combine
  • cluster_combine_dist
  • clusterfilter
  • undrift
  • density
  • dbscan
  • hdbscan
  • smlm_cluster
  • dark
  • align
  • groupprops
  • pc
  • nneighbor
  • render
  • design
  • simulate
  • average
  • average3
• Postprocessing
  • Jupyter Notebooks
• nanoTRON
  • nanoTRON Train
  • nanoTRON Predict
• Plugins
  • Usage
  • For developers
• FAQ
  • Localize

Indices and tables

• Index
• Module Index
• Search Page